@@ -98,6 +98,10 @@ The colours of each clone may be changed by the $clone\_colours$ parameter. This

 1. character() $clone\_id$ - the clone ids

 2. character() $colour$ - the corresponding Hex colour for each clone id.

+## Mutation order

+

+The order of targeted mutations in the heatmap may be specified by the $mut\_order$ vector. Each element in the vector describes a mutation by its chromosome and coordinate, and is formatted as such: "\<chromosome\>:\<coordinate\>".

+

 ## Titles

 Many titles throughout the view can be changed by the following parameters: