You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
Copy file name to clipboardExpand all lines: README.md
+1-1Lines changed: 1 addition & 1 deletion
Display the source diff
Display the rich diff
Original file line number
Diff line number
Diff line change
@@ -23,7 +23,7 @@ Key parameters:
23
23
-`-a` Output file name. Format .gam or .json.
24
24
25
25
Parameters related to colinear chaining:
26
-
-`--speed <int>` Use 2 or 3 (or larger values) if you want GraphChainer to be faster, but sligthly less accurate (default 1).
26
+
-`--speed <int>` Use 2 or 3 (or larger values) if you want GraphChainer to be faster, but slightly less accurate (default 1).
27
27
-`--colinear-split-len <int>` The length of the fragments in which the long read is split to create anchors (default 35).
28
28
-`--colinear-split-gap <int>` The distance between consecutive fragments (default 35). If `--speed` is set, then always `--colinear-split-gap = --speed * --colinear-split-len`.
29
29
-`--colinear-gap <int>` When converting an optimal chain of anchors into an alignment path, split the path if the distance in the graph between consecutive anchors is greater than this value (default 10000).
0 commit comments