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‎Dockerfile‎

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FROM nvidia/cuda:9.0-cudnn7-runtime-ubuntu16.04
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# Contributors: Syed Navaid (https://github.com/syedahmad)
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# Vlad Hosu (https://github.com/subpic)
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RUN apt-get update && apt-get install -y \
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wget \
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vim \
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bzip2 \
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graphviz \
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mc \
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htop \
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emacs-nox \
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rsync \
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less \
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curl \
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#software-properties-common \
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build-essential \
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libfreetype6-dev \
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libpng12-dev \
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openssh-client
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RUN curl -s https://packagecloud.io/install/repositories/github/git-lfs/script.deb.sh | bash
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#Downgrade CUDA, TF issue: https://github.com/tensorflow/tensorflow/issues/17566#issuecomment-372490062
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RUN apt-get install --allow-downgrades --allow-change-held-packages -y libcudnn7=7.0.5.15-1+cuda9.0 git-lfs
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#Install MINICONDA
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RUN wget https://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh -O Miniconda.sh && \
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/bin/bash Miniconda.sh -b -p /opt/conda && \
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rm Miniconda.sh
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ENV PATH /opt/conda/bin:$PATH
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#Install ANACONDA Environment
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RUN conda create -y -n jupyter_env python=3.6 nb_conda_kernels py-xgboost-gpu \
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anaconda ipykernel tensorflow-gpu keras-gpu matplotlib numpy scipy pandas \
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Pillow pydot munch scikit-learn && \
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/opt/conda/envs/jupyter_env/bin/pip install jupyter-tensorboard gitless opencv-python && \
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/opt/conda/envs/jupyter_env/bin/python -m ipykernel.kernelspec
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RUN conda create -y -n jupyter_env27 python=2.7 nb_conda_kernels py-xgboost-gpu \
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anaconda ipykernel tensorflow-gpu keras-gpu matplotlib numpy scipy pandas \
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Pillow pydot munch scikit-learn && \
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/opt/conda/envs/jupyter_env27/bin/pip install jupyter-tensorboard gitless opencv-python && \
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/opt/conda/envs/jupyter_env27/bin/python -m ipykernel.kernelspec
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# Install OpenCV
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RUN apt-get update && apt-get install -y libopencv-dev && \
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echo 'ln /dev/null /dev/raw1394' >> ~/.bashrc
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RUN set -x \
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&& cd /tmp \
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&& wget https://github.com/sdg-mit/gitless/releases/download/v0.8.8/gl-v0.8.8-linux-x86_64.tar.gz \
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&& tar -C /usr/bin/ -xvf gl-v0.8.8-linux-x86_64.tar.gz --strip-components=1 \
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&& rm -f gl-v0.8.8-linux-x86_64.tar.gz
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COPY docker_deps/entrypoint.sh /root/
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COPY configs/jupyter_notebook_config.py /root/.jupyter/
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RUN chmod +x /root/entrypoint.sh
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ENV LC_ALL=C.UTF-8 LANG=C.UTF-8
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ENV PYTHONPATH='/mnt/home/research/:/mnt/home/:$PYTHONPATH'
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ENV PASSWORD unknownknowns
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ENV LD_LIBRARY_PATH /usr/local/cuda/lib64:$LD_LIBRARY_PATH
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WORKDIR /mnt/home/
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# IPython
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EXPOSE 8888 6006
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CMD bash /root/entrypoint.sh
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FROM nvidia/cuda:9.0-cudnn7-runtime-ubuntu16.04
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# Contributors: Syed Navaid (https://github.com/syedahmad)
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# Vlad Hosu (https://github.com/subpic)
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RUN apt-get update && apt-get install -y \
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wget \
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vim \
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bzip2 \
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graphviz \
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mc \
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htop \
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emacs-nox \
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rsync \
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less \
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curl \
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#software-properties-common \
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build-essential \
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libfreetype6-dev \
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libpng12-dev \
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openssh-client
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RUN curl -s https://packagecloud.io/install/repositories/github/git-lfs/script.deb.sh | bash
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#Downgrade CUDA, TF issue: https://github.com/tensorflow/tensorflow/issues/17566#issuecomment-372490062
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RUN apt-get install --allow-downgrades --allow-change-held-packages -y libcudnn7=7.0.5.15-1+cuda9.0 git-lfs
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#Install MINICONDA
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RUN wget https://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh -O Miniconda.sh && \
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/bin/bash Miniconda.sh -b -p /opt/conda && \
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rm Miniconda.sh
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ENV PATH /opt/conda/bin:$PATH
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#Install ANACONDA Environment
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RUN conda create -y -n jupyter_env python=3.6 nb_conda_kernels py-xgboost-gpu \
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anaconda ipykernel tensorflow-gpu keras-gpu matplotlib numpy scipy pandas \
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Pillow pydot munch scikit-learn && \
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/opt/conda/envs/jupyter_env/bin/pip install jupyter-tensorboard gitless opencv-python && \
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/opt/conda/envs/jupyter_env/bin/python -m ipykernel.kernelspec
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RUN conda create -y -n jupyter_env27 python=2.7 nb_conda_kernels py-xgboost-gpu \
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anaconda ipykernel tensorflow-gpu keras-gpu matplotlib numpy scipy pandas \
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Pillow pydot munch scikit-learn && \
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/opt/conda/envs/jupyter_env27/bin/pip install jupyter-tensorboard gitless opencv-python && \
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/opt/conda/envs/jupyter_env27/bin/python -m ipykernel.kernelspec
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# Install OpenCV
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RUN apt-get update && apt-get install -y libopencv-dev && \
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echo 'ln /dev/null /dev/raw1394' >> ~/.bashrc
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RUN set -x \
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&& cd /tmp \
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&& wget https://github.com/sdg-mit/gitless/releases/download/v0.8.8/gl-v0.8.8-linux-x86_64.tar.gz \
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&& tar -C /usr/bin/ -xvf gl-v0.8.8-linux-x86_64.tar.gz --strip-components=1 \
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&& rm -f gl-v0.8.8-linux-x86_64.tar.gz
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COPY docker_deps/entrypoint.sh /root/
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COPY configs/jupyter_notebook_config.py /root/.jupyter/
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RUN chmod +x /root/entrypoint.sh
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ENV LC_ALL=C.UTF-8 LANG=C.UTF-8
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ENV PYTHONPATH='/mnt/home/research/:/mnt/home/:$PYTHONPATH'
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ENV PASSWORD unknownknowns
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ENV LD_LIBRARY_PATH /usr/local/cuda/lib64:$LD_LIBRARY_PATH
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WORKDIR /mnt/home/
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# IPython
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EXPOSE 8888 6006
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CMD bash /root/entrypoint.sh

‎build.sh‎

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docker build -f Dockerfile -t jupyter-data-science .
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docker build -f Dockerfile -t jupyter-data-science .

‎configs/jupyter_notebook_config.py‎

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# Copyright 2015 The TensorFlow Authors. All Rights Reserved.
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#
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# Licensed under the Apache License, Version 2.0 (the "License");
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# you may not use this file except in compliance with the License.
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# You may obtain a copy of the License at
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#
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# http://www.apache.org/licenses/LICENSE-2.0
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#
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# Unless required by applicable law or agreed to in writing, software
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# distributed under the License is distributed on an "AS IS" BASIS,
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# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
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# See the License for the specific language governing permissions and
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# limitations under the License.
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# ==============================================================================
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import os
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from IPython.lib import passwd
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c.JupyterApp.ip = '*'
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c.JupyterApp.port = int(os.getenv('PORT', 8888))
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c.JupyterApp.open_browser = False
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c.MultiKernelManager.default_kernel_name = 'jupyter_env'
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c.JupyterApp.terminado_settings = { 'shell_command': ['bash'] }
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# sets a password if PASSWORD is set in the environment
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if 'PASSWORD' in os.environ:
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c.JupyterApp.password = passwd(os.environ['PASSWORD'])
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del os.environ['PASSWORD']
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# Copyright 2015 The TensorFlow Authors. All Rights Reserved.
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#
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# Licensed under the Apache License, Version 2.0 (the "License");
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# you may not use this file except in compliance with the License.
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# You may obtain a copy of the License at
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#
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# http://www.apache.org/licenses/LICENSE-2.0
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#
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# Unless required by applicable law or agreed to in writing, software
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# distributed under the License is distributed on an "AS IS" BASIS,
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# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
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# See the License for the specific language governing permissions and
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# limitations under the License.
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# ==============================================================================
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import os
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from IPython.lib import passwd
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c.JupyterApp.ip = '*'
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c.JupyterApp.port = int(os.getenv('PORT', 8888))
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c.JupyterApp.open_browser = False
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c.MultiKernelManager.default_kernel_name = 'jupyter_env'
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c.JupyterApp.terminado_settings = { 'shell_command': ['bash'] }
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# sets a password if PASSWORD is set in the environment
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if 'PASSWORD' in os.environ:
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c.JupyterApp.password = passwd(os.environ['PASSWORD'])
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del os.environ['PASSWORD']

‎docker_deps/entrypoint.sh‎

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#!/usr/bin/env bash
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# Copyright 2015 The TensorFlow Authors. All Rights Reserved.
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#
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# Licensed under the Apache License, Version 2.0 (the "License");
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# you may not use this file except in compliance with the License.
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# You may obtain a copy of the License at
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#
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# http://www.apache.org/licenses/LICENSE-2.0
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#
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# Unless required by applicable law or agreed to in writing, software
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# distributed under the License is distributed on an "AS IS" BASIS,
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# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
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# See the License for the specific language governing permissions and
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# limitations under the License.
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# ==============================================================================
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conda init bash
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nohup /opt/conda/envs/jupyter_env/bin/tensorboard --logdir=/mnt/home/research/data/logs&
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/opt/conda/envs/jupyter_env/bin/jupyter-lab "$@" --allow-root
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#!/usr/bin/env bash
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# Copyright 2015 The TensorFlow Authors. All Rights Reserved.
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#
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# Licensed under the Apache License, Version 2.0 (the "License");
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# you may not use this file except in compliance with the License.
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# You may obtain a copy of the License at
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#
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# http://www.apache.org/licenses/LICENSE-2.0
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#
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# Unless required by applicable law or agreed to in writing, software
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# distributed under the License is distributed on an "AS IS" BASIS,
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# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
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# See the License for the specific language governing permissions and
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# limitations under the License.
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# ==============================================================================
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conda init bash
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nohup /opt/conda/envs/jupyter_env/bin/tensorboard --logdir=/mnt/home/research/data/logs&
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/opt/conda/envs/jupyter_env/bin/jupyter-lab "$@" --allow-root

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